YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169767986
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGGRVLCI ITPYALTIAS LVCIIIVGLG CTNSGSSTLN DLYFFRADLQ NMTTTATNQS  60
   61 TISQALSDAG VTVSDGDISA ALEQVQKQFD LKDFYNIGLW GYCDGNVTND KFEVSECSKP 120
  121 KGEFWFNPIE VWNLEETGVE NGLPSGLRKS LNLYKNVSKW MFIAYIVAFV ATVVELVVGV 180
  181 FAICSRWGSC VTTLISGVAF LFTAAASVTA TAMFATVTGA FNENLKDYGM HGSMGKNIYV 240
  241 TTWLAVAFSL GAALFWMLST CCCSGRSPYN HKNTPRGVTA EKTPYTYEPI GPQGHQQASP 300
  301 YNTSYPPPPP TQNRSNAYEP FRHV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.83
Transmembrane Helix	10	31	0.90
Non-Cytoplasmic	32	160	0.95
Transmembrane Helix	161	184	0.92
Cytoplasmic	185	192	0.77
Transmembrane Helix	193	215	0.89
Non-Cytoplasmic	216	238	0.86
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	324	0.94