YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169767816
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDGASYSTG DSPDLQAIPS DDMLSDLDDV AGSSDSFYSP SGTPRRPSFS YQDDWETFPP  60
   61 LDKLTVFDLL DNFSLSQRLE KLQHTINMQK EKMKKQREKL KYTSATAKDR VVGEFKRRVP 120
  121 TADEQLDKYR RRMKVGVERL GKQWNATATV TLREKISFIA GVLNIFFSGY LIGAHPESFY 180
  181 IWFTVQLAYF MPIRYYRYHA KGYHYFLADL CYFVNLLCML SIWAFPNSKR LFISAYCLTF 240
  241 GNNAVAIAMW RNSLVFHSMD KVVSLFIHIM PPATWHCIVH LTSAETLKER FPAIYDIKFS 300
  301 EPGSPDHFSL LSMMVWATVP YTIWQLSYHC FITVRRAEQI AAGRPTSFTW LRKSYAKAWI 360
  361 GKIVLSLPES LQAPAFMLIQ YFYAILTMIP CPLWLWSRWA SGLFLTGLFI LSIHNGATYY 420
  421 IDVFGKRFQK ELEALKKDVA RWQSSPEGTA SPTILTSDSA VATGTHVLDD SKGAAKNGGS 480
  481 DKASIDKIPL LDSTVTASGI EEAASGSPSV RERK

Type	Start	End	Confidence
Cytoplasmic	1	155	0.96
Transmembrane Helix	156	174	0.87
Non-Cytoplasmic	175	178	0.64
Transmembrane Helix	179	196	0.54
Cytoplasmic	197	204	0.43
Transmembrane Helix	205	225	0.94
Non-Cytoplasmic	226	231	0.47
Transmembrane Helix	232	254	0.83
Cytoplasmic	255	261	0.50
Transmembrane Helix	262	282	0.56
Non-Cytoplasmic	283	308	0.70
Transmembrane Helix	309	328	0.70
Cytoplasmic	329	362	0.79
Transmembrane Helix	363	396	0.59
Non-Cytoplasmic	397	399	0.61
Transmembrane Helix	400	421	0.84
Cytoplasmic	422	514	0.88