YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1_ASPOR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.39
Transmembrane Helix	16	41	0.70
Cytoplasmic	42	46	0.47
Transmembrane Helix	47	70	0.84
Non-Cytoplasmic	71	76	0.43
Transmembrane Helix	77	97	0.87
Cytoplasmic	98	134	0.54
Transmembrane Helix	135	158	0.85
Non-Cytoplasmic	159	170	0.51
Transmembrane Helix	171	193	0.79
Cytoplasmic	194	210	0.60
Transmembrane Helix	211	230	0.74
Non-Cytoplasmic	231	241	0.51
Transmembrane Helix	242	262	0.73
Cytoplasmic	263	263	0.36
Transmembrane Helix	264	287	0.53
Non-Cytoplasmic	288	311	0.90
Transmembrane Helix	312	331	0.90
Cytoplasmic	332	350	0.88
Transmembrane Helix	351	373	0.88
Non-Cytoplasmic	374	390	0.87
Transmembrane Helix	391	414	0.79
Cytoplasmic	415	439	0.91
Transmembrane Helix	440	463	0.82
Non-Cytoplasmic	464	469	0.81
Transmembrane Helix	470	491	0.93
Cytoplasmic	492	500	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSYKARKE AFVSNLAGGS ILEINAVTLV APTSVLLWSV LQSRLSFFIP YGALALVTDF  60
   61 FLNVLPILFA TTLYSSAPWT LNILLALPAL ILLFTSTPSR TQQKAKPPRP SAAAKKNTPK 120
  121 HASDSPEPLP VHPFLTTYRA AMMVITCVAI LAVDFRIFPR RFAKAENWGT SLMDLGVGSF 180
  181 VFSSGVVSAR SILKGRNSHS KKAGLWQRLA ASARHSIPLL VLGLVRLYSV KGLDYAEHVT 240
  241 EYGVHWNFFF TLGLLPPFVE IFDALAAIIP SYEILSLGIV VLYQVALEST DLKSYILVSP 300
  301 RGPDLLSKNR EGVFSFLGYL AIFLTGRAIG IRIIPRGTSA SRSPQQARKS VLISLGLQTL 360
  361 VWTTLFVFNS THAMGLGAGI PVSRRLANMP YVLWVSAFNN AQLFLFCLLE STFFPSIHRE 420
  421 TGKDGELERT SFATSRIMTA FNKNGLALFL VANLLTGAVN LSVPTLDVTT AHAMVVLIAY 480
  481 VAMITGVALA LDRANIKLSL