YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220700655, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKTADATQ PRAGDIKKVH IADTAITRSN WHKHVNWLNV FLIIGIPMYG CVQALWVPLQ  60
   61 LKTAIWAVIY YFFTGLGITA GYHRLWAHCS YSARLPLRIW LAAVGGGAVE GSIRWWARDH 120
  121 RAHHRYTDTE KDPYSVRKGL LYSHLGWMVM KQNPKRIGRT DISDLNEDPV VVWQHRNYLK 180
  181 VVFTMGLFVP MLVAGLGWGD WWGGFVYAGI LRIFFVQQAT FCVNSLAHWL GDQPFDDRNS 240
  241 PRDHVITALV TLGEGYHNFH HEFPSDYRNA IEWHQYDPTK WSIWIWKQLG LAYDLKQFRA 300
  301 NEIEKGRVQQ LQKKIDQKRA KLDWGVPLDQ LPVMEWDDYV EQAKNGRGLI AIAGVVHDVT 360
  361 DFIKDHPGGK AMINSGIGKD ATAMFNGGVY YHSNAAHNLL STMRVGVIRG GCEVEIWKRS 420
  421 QKESTDYVRD SSGQRVIRAG EQVTKIPEPI PTADAA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.82
Transmembrane Helix	35	57	0.90
Non-Cytoplasmic	58	63	0.71
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	96	0.72
Transmembrane Helix	97	117	0.72
Non-Cytoplasmic	118	180	0.56
Transmembrane Helix	181	202	0.86
Cytoplasmic	203	208	0.43
Transmembrane Helix	209	231	0.66
Non-Cytoplasmic	232	456	0.54