YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83765123
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESPPPPPS WSITNMANSA AQYLRLPVLA SSGLAVVASG LLYFKQNELI YPRNVPTDAR  60
   61 TFVPKPRQFG VNNYEELQIP TPDGESLHAL FLRPSKKGLA GDITVLMFHG NAGNIGHRIP 120
  121 IARVLLDILG CNVLMLEYRG YGLSTGVPDE AGLKIDAQTG LDYIRQRAET SNNKVIVYGQ 180
  181 SLGGAVAINL VAENQDKGDI GGLILENTFL SIRKLIPTVF PPARYLARFC HQYWTSEEVL 240
  241 PKITKVPILF LSGLKDEIVP PSNMTQLFAI CQSERKVWRT LPNGAHNDSV AEPGYFEHIH 300
  301 SFIKEEVIDQ D

Type	Start	End	Confidence
Cytoplasmic	1	20	0.62
Transmembrane Helix	21	44	0.71
Non-Cytoplasmic	45	311	0.84