YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83772230
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFRRRIPY SLGADLLPEE REGLKERLEP EEEKRLTDNM LEVYDRLLPS AESDDRRRQL  60
   61 VRKLERLFNE QWPGRDIKVH VFGSSGNKLC SSDSDVDICI TTTYKELEQV CLLAEVLARH 120
  121 GMERVVCVSH AKVPIVKIWD PELQLACDMN VNNTLALDNT RMVRTYVEID ERVRPLAMII 180
  181 KHWTKRRILC DAGLGGTLSS YTWICLIINF LQTRNPPILP SLQARPHEKK ISPEGLVCSF 240
  241 DDDLGNLTGY GRKNKQSLGD LFFQFFKYYG HELDYEKYVV SVREGKLISK EAKGWHLLQN 300
  301 NRLCVEEPFN TSRNLGNTAD DTSFRGVHLE LRRAFKAASQ GDLELCCEQY EYPPEEERSW 360
  361 ERPPPQPRPV LTAPPSSRGG RGGGRGGRNS HQYPRGGHNG SRRSSNTPHK SNNFRQASNA 420
  421 TKSSASHRET TTCAYPSAIH TVSDASTAGV NRRRQLSLKV RNSEPRSPRN AAPPACLLWH 480
  481 PLPSGCDHGL ARQ

Type	Start	End	Confidence
Cytoplasmic	1	187	0.70
Transmembrane Helix	188	211	0.64
Non-Cytoplasmic	212	493	0.99