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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83771983
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMPGMGSDF QLFSPAQSSD RRESQTDSMV FPQSSPEDSG QDWTQWMRWD DHSFPETTNE  60
   61 ITQSPFDFPF TSPGTSIGKQ SLGAVQKSEF SPDISLDCVT NLPFDSFLGQ DGGGGLPPHR 120
  121 SSNAGTDMQS AQSTTSGSPM SLAGAKRKSG SDDDGSTVSG LAPPGKKMPS KKRAHNVIEK 180
  181 RYRANLNEKI AELRDSVPSL RASRHLVDED DGEGVTPANK LNKASILSKA TEYIRHLEIR 240
  241 NKRLEDENTA LKNRLRQLDK AVDQNVTSAA SVSSPSNYTE SGASSSPSVF SNAEDVPSDP 300
  301 SPTSLHPPEG MIKVPDAFKR MRAAAPRDES WSQSYIQYPS SGNASPQPGS RKRSHYPNKY 360
  361 MLGALAGLMV FEGMSSEKKT ESTAKGLLAI PVNFFNNLQL PPAGYWVTWA RSFWYSWHAR 420
  421 AISHFLILAT LVVGSAFIVF VYLFNSGGPG LQYSSSKSAS ATLSSSNFRR QAWLTSIQRV 480
  481 GVPRHTFFHE WYVVTSRCFE YVLRCLLGWK LYSWATGITE EDEKGRVKTW DIAIDAQLAG 540
  541 GDAEVSKSRL VLTIFAAGTL PRSPMRMMLK ALHVRILLWR VGDPGSWTFN VSNDIARSLA 600
  601 RYQWDLARKM NSSLPEDHPD VLPSHLSALL ELDSEEVMID SVIQRAANLT WNRPTQEGTD 660
  661 GDEALLDVVE EDPAIQSSLD ALAAWWSSHL LQRALLRYFE ASAGGQDRRK SRDAFKSKLR 720
  721 TALNVAPQPS AAHTRALVMK AVFFEQDRVA NINMVLAALP KDKGNTKKAQ ASNFLDSSLP 780
  781 VSVRDEINIA VRCAMIAAIF TARTTGDTSL PASFTMQKAV SWFNQLPLDP VELTLLGFAA 840
  841 TYHLLHVLAS DTDYMNSSDS SVPSSPVSRH RSLSDNESDR PAPSHNPKCS PLIPNLSRVA 900
  901 SELSYWAKNA YNPAFYGFTS HLVGVVDAEC KTLCHSAGVD LIDYSRIQEE RSKAIRNKDE 960
  961 KKKKKPRKKS NEDSRQTRWA ISNSKPAQCP SPESSREVEA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle