YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83771702
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGVLIFLV VNLLILSFLV RSVFTLLSLL VEDASADAIH RAELPSPNSS LIEQRPQVIP  60
   61 KIIHQTYKNE TIPEVWREAQ QSCIDLHPDY EYILWTNEKA REFIAHEYPW FLATFDGYKY 120
  121 PIQRADSIRY FVLAHYGGTY IDLDDGCNRR LDPLLSYPAW VRRTAPTGIS NDAMGSVPQH 180
  181 PFFLRVIELL QSYDRSWLLP YITVMYSTGP LFLSVIWKEY MQEAMGESSR VRILMQDEYN 240
  241 RYSWSFFTHH VGNSWHGKDA RLIFWMGQHW MFLTVCGFIL VGSVGFCLWW VYGRLILLGS 300
  301 KYRYRYTKVP TFISVSGLSP TRRPRRPTPT LLRRVSFKED EETGPITETS YELYSRRD

Type	Start	End	Confidence
Signal Peptide	1	25	0.89
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	196	0.94
Transmembrane Helix	197	217	0.74
Cytoplasmic	218	269	0.57
Transmembrane Helix	270	293	0.93
Non-Cytoplasmic	294	358	0.45