YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169776979
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSNNRLFR FSKPEWLNNN SVRNAGVYTS GALFSLGFFF LVDAAAFSHS SRNGSNVHVK  60
   61 FVDWIPGICS ALGMLVINSI EKSRLHADSW SYSGSGVAWK ARFVLFLGFA LLAGGLAGSV 120
  121 TVMVLKYLIK QYPLQTLYFG IANVVANGLV MLSTIVLWIS QNIEDDYTYN LAL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.72
Transmembrane Helix	21	47	0.79
Non-Cytoplasmic	48	60	0.67
Transmembrane Helix	61	80	0.82
Cytoplasmic	81	100	0.57
Transmembrane Helix	101	125	0.87
Non-Cytoplasmic	126	136	0.52
Transmembrane Helix	137	159	0.91
Cytoplasmic	160	173	0.59