YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169776641
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.89
Transmembrane Helix	128	146	0.77
Non-Cytoplasmic	147	162	0.74
Transmembrane Helix	163	185	0.88
Cytoplasmic	186	205	0.85
Transmembrane Helix	206	224	0.91
Non-Cytoplasmic	225	232	0.72
Transmembrane Helix	233	255	0.82
Cytoplasmic	256	261	0.78
Transmembrane Helix	262	280	0.92
Non-Cytoplasmic	281	285	0.71
Transmembrane Helix	286	305	0.94
Cytoplasmic	306	331	0.92
Transmembrane Helix	332	351	0.95
Non-Cytoplasmic	352	391	0.93
Transmembrane Helix	392	414	0.84
Cytoplasmic	415	420	0.76
Transmembrane Helix	421	447	0.80
Non-Cytoplasmic	448	553	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTAIVTGTG RRSSIRQSDL QPPATDFISQ SMTTSPIDKF PQFKDDLYEI AAGPRESHSN  60
   61 FATKYTPNDR WEPRKENNFA SEYTNGTIRH SKHKPRKSIS EAISTIRTRN ASVSANAQEL 120
  121 AQALRAPVSY KLISLCLIWY MTSALTNTSS KSILNALPKP ITLTIVQFAF VSIWCLLLSY 180
  181 LSKILPWLRN SIPALKNGIR YPSRDVIMTA LPLAVFQLAG HILSSMATSQ IPVSLVHTIK 240
  241 GLSPLFTVLA YRVFFRIRYA SATYLSLVPL TLGVMLACST GFSTNFFGII CALVAALVFV 300
  301 SQNIFSKKLF NETARGESET QVSAQRKLDK LNLLCYCSGL AFILTLPIWV LCEGYPLLSN 360
  361 VLRDGSISLS GKENSLDHGA LLLEFVFNGV SHFAQNILAF VLLSMISPVS YSVASLVKRV 420
  421 FVIVVAIVWF GNSTTGMQAI GIALTFIGLY LYDRNSHDDL ADQRANADHF HTKENVLPLN 480
  481 IRSTTKTWDS NGYVFPPGKT SERQFLDETH SFPNDLKKDD DRPGRVRPRG SSNTRAWLPP 540
  541 GTKQETTWQP SDS