YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83771195
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.98
Transmembrane Helix	73	94	0.89
Non-Cytoplasmic	95	101	0.76
Transmembrane Helix	102	124	0.91
Cytoplasmic	125	162	0.99
Transmembrane Helix	163	184	0.94
Non-Cytoplasmic	185	207	0.89
Transmembrane Helix	208	233	0.89
Cytoplasmic	234	249	0.94
Transmembrane Helix	250	272	0.90
Non-Cytoplasmic	273	285	0.86
Transmembrane Helix	286	305	0.94
Cytoplasmic	306	314	0.83
Transmembrane Helix	315	335	0.92
Non-Cytoplasmic	336	354	0.81
Transmembrane Helix	355	381	0.75
Cytoplasmic	382	392	0.88
Transmembrane Helix	393	415	0.91
Non-Cytoplasmic	416	427	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTSPIPAN DTEQLPETQA PPPTTEEASQ RQAWSSEGYG LPPTSDKPPY GPVEPTPSRR  60
   61 EPVARPLSKH ATHLFTLSYL IFFAIFGTLA RLGLQALTIY PGAPVVTGVL WANVGGSLLM 120
  121 GFFLEDKNLF REEWGDVNQN NSNGTGTDPS AESKRHKSVK KTIPLYIGLT TGFCGCFTSF 180
  181 SSFIRDIFLA LSNDLSDPST PNGGYSFMAL VAVILTTVAL SLGALIFGAH LALALDPLIP 240
  241 SFPFRFTRRF IDPLFIILGW GCWLGAVFLA IWPPDRHDNG PEFWRGRAVF AVVFAPLGCF 300
  301 LRYYVSLVLN TRLPAFPLGT FAVNIFGTII LAMCYDLQHV DGIGASSLGS GASSSILTSC 360
  361 QVLAGVMDGF CGSATTISTW VAELNGLSRR RHAYFYGIVN IGVALGFFVI ITGSLRWTKG 420
  421 FVEPVCE