YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169775753
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.75
Transmembrane Helix	12	32	0.92
Cytoplasmic	33	37	0.67
Transmembrane Helix	38	58	0.67
Non-Cytoplasmic	59	71	0.47
Transmembrane Helix	72	88	0.48
Cytoplasmic	89	101	0.78
Transmembrane Helix	102	123	0.95
Non-Cytoplasmic	124	130	0.75
Transmembrane Helix	131	153	0.79
Cytoplasmic	154	172	0.77
Transmembrane Helix	173	191	0.83
Non-Cytoplasmic	192	203	0.81
Transmembrane Helix	204	226	0.90
Cytoplasmic	227	244	0.92
Transmembrane Helix	245	265	0.92
Non-Cytoplasmic	266	324	0.61
Transmembrane Helix	325	343	0.95
Cytoplasmic	344	362	0.82
Transmembrane Helix	363	384	0.91
Non-Cytoplasmic	385	415	0.83
Transmembrane Helix	416	437	0.59
Cytoplasmic	438	532	0.53
Transmembrane Helix	533	547	0.28
Non-Cytoplasmic	548	1047	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWDHLDIDK PHLAYMILGG FTGLFMLCSL FVKEKLYIGE ATVATLCGII FGPHAANLFN  60
   61 PHEWGNVDKI TLECSRIVLV VQCFAVGVEL PKSYMNRHWK SVFLLLVPVM TWGWLITSLF 120
  121 IWWMVPPLSW LESLVCAACV TATDPVLASS VVGKGKFAKR VPKHLRDLLS AESGCNDGMA 180
  181 FPFIYLSFYI LRYRPDAGKV TLNWICVTIL YECIFGAVYG FLIGYFARHS IKYAERKQLI 240
  241 DRESFLVFYF VLAVFCAGSG SLLGMDDLLI GFAAGVGFSN DGWFTEKTEE SHVSNVIDLL 300
  301 LNLAYFVYFG SIVPWEMYNA PELGLVPWRL VVIAILVIFF RRIPIMLILK PIIPDVKTWR 360
  361 EALFAGHFGP IGVGAIFAAI LARAELETDS TQPLTEAELP KAGTADYYIV QLIWPITTFM 420
  421 VISSILVHGS SIAVFTLGKR INTLTITLSY TTANEEGPSW MNRLPRVQSI AKGSMSFRKP 480
  481 DDTDASSNEQ EYPPGTLPPI GVPGNFLRRV RDEDTESPTG RTSSRRPRRR RRHASGAGGP 540
  541 ISQSAIAPQR TVESEDAEEE DERDKIEREG SPPSKERDQF GREPIVEAYL EGHHMIIEDE 600
  601 EGNVLKTEDV SHVSPEERQR HIEAQRDRLL QEKSGEFAKS KSQPHARSEG EEVEEALEEK 660
  661 AGHPLEKARK RFGQWIGLGK GRAQEVEDQE VEKAPTTKQQ PTATDKKPKG KSRSAHAYQF 720
  721 GNTIIVEDED GEVIKKYSIP STDKPETGAP VRRGLTRMGT WFGMDGEGEP SQAEKKSAND 780
  781 DWLADDGLRF TVADDDNISK KGVSHKGRRM NKHEFVQQLR NLGPRARREL VEETDVPQHV 840
  841 KEVARDEARD AERKESLAGG SAQDTQHGTT PARPASISSS ESSNGSDIGV PGDNIAASLA 900
  901 RFTRGTAAEE RRSTLNPSTR PRSRRDSEDD GTERVPPAQL REAAGLSPPP QQDDDDTGET 960
  961 PAERRRRLAA LGELNLDDSD ESDAAVESDS EDNTGFRRVG SKVQFVEGTK PSDSGNGSNS1020
 1021 NQGNGSSSSS SAHQRSISWG GEKGREA