YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83770788
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARDAIPET PRVISPSPAP SESRSRSRDG YSAPTTRSAA RRQRLVDVSE ESNNERQSGS  60
   61 RRSRTRSRSP TSPAGSTRQR KRKSNPMRPA KSPEPQTNGG AKPNGFLSPL AKADGIAHSI 120
  121 SRSPSPMGLI PLHTRYRSFI HRHEIPRKVL HVSIGFFTLH LYSRGIQTTQ ITPWLFGALV 180
  181 PIAAVDVVRH RSETINKLYV RCVGALMRET EVQGYNGVIW YLLGAYAVLR FFPKDVGVMG 240
  241 VLLLSWCDTA ASTFGRLYGR HTFQLRKGKS FAGTLSAWLV GVITAAAFWG FFVPNVGPFP 300
  301 NDPENAFMFT GRLNLVPDTI KNLIGWTADT VISGPLALGV MSVVSGLVAA GSEFVDLFGW 360
  361 DDNFTIPVLS GIGLWGFLKV FG

Type	Start	End	Confidence
Cytoplasmic	1	144	0.87
Transmembrane Helix	145	163	0.69
Non-Cytoplasmic	164	170	0.68
Transmembrane Helix	171	190	0.75
Cytoplasmic	191	211	0.82
Transmembrane Helix	212	230	0.77
Non-Cytoplasmic	231	237	0.67
Transmembrane Helix	238	258	0.86
Cytoplasmic	259	270	0.89
Transmembrane Helix	271	293	0.90
Non-Cytoplasmic	294	330	0.91
Transmembrane Helix	331	351	0.84
Cytoplasmic	352	359	0.66
Transmembrane Helix	360	378	0.76
Non-Cytoplasmic	379	382	0.53