YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169763372
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGANHAHNG QSNHDQFPEL PHNGALELSP NVLQALEEAS TEDGQDNVVL GKRLRTLPAW  60
   61 IRSVDYKEPE GESSAASRLL PSHPDDAVVA QHNHSPYTTA KVDFAGRGTS LEEGRATSPR 120
  121 ESRWKSFSRS IAYPRDPGVE EKLVTPEWLN ENHGDYSQPW RGRLEDWSGE DTEDPLRMKR 180
  181 RREIWFKRFH HTLLKSPIVP LIFRLTVWVF SLTALALGAS IQHMSREYAH PQGPSALMAI 240
  241 IVDAVALVYL VYITWDEYTS KPLGLRSPSA KARLVLLDIF FIVFDSANLS LAFESLSTVS 300
  301 GACTIGEVNQ QVAPKNDAIC DRQIALASVL LIALLAWLTT FAISVLRYSH LSLFLLCSFI 360
  361 L

Type	Start	End	Confidence
Cytoplasmic	1	200	0.96
Transmembrane Helix	201	221	0.87
Non-Cytoplasmic	222	234	0.78
Transmembrane Helix	235	253	0.97
Cytoplasmic	254	273	0.87
Transmembrane Helix	274	293	0.80
Non-Cytoplasmic	294	323	0.79
Transmembrane Helix	324	346	0.86
Cytoplasmic	347	361	0.71