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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|169763226
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAVLPGRPR AKLQSFSTAL WDGLRVVVYI SGHALVILGG PHTLLQTIYV DDTESLEAVT  60
   61 IDEASGKIAV CGGPDIFIYQ PYGIKHETLK WSLVQTFRYE NDDETIRTLS WGSPDELLLG 120
  121 NSHLTLWFLN DVPRPVWKQK LANPVKFAQF SPDSTLLITT GYYDRLVKVW RRLSFGADDV 180
  181 RFEVSYLPHP AIVTGVHWRK PFHKEQSIDN VLYTLCADNQ IRIWAMMEHH SPTVLQLWTQ 240
  241 IDMGASVQPR HTADQRDMSR RYGFVIDSRD FCVATEQAVQ RSAGSKGNHA LEHIIEVANK 300
  301 SPEICVVIDG QGHMSAWALE DVGSKSKSDL NAFNILHVEG LNFAFMRGLA ADEDYAQICA 360
  361 FQSTHSGDSL SILVHHFDGR IEWYDSQVDT LFDPSPRKDR IALKASWTGH NGPVKKIVRN 420
  421 AIGDTLVSRT DDNKAMVWKQ KRRNSGSMLI RKSSLYSDEH IHRTCVVENG DFLVNLHHNG 480
  481 ISVWDLRSFH ARKIAASTFQ LSSKPLCVLP IPTTEKGMVY IATIGADRNG IAWEIRLPTA 540
  541 TKQANGAHSS QCCLQKFCTF NLGLEEDMSY ILPVDPAGPK AEMSGFFDIF SPDIALSYTR 600
  601 TGIVHTWAAK VDREKSRVEW LLTSTVETGI ANPSLASGSS IRKAALVDED RSHLTIWDTN 660
  661 GAQLEYEEHF GQKDIIRDLD WTSTPDMQSI LAVGFPHKVI LLSQLRYDYL DARPSWTQVR 720
  721 EIWIRDLTPH PIGDSCWLNN GHLVIGAGNQ LFVYDNEIDA NDRLVSQLRI PSRRHGFVDL 780
  781 FEVVSRLNGP LPVFHPQFLA QCILSGKSNL AHSILIRLHR KLKFYTEGDD LDGFLDMSLE 840
  841 DFYLEHDTSQ KASSKELHSA YEDLSLEDEP SVMDENTAIV LNENLARVAL PQLSSQEQFR 900
  901 LADTIECVAT VEKHRRSMDD NAARYLLFFR QHMLRRTQGV ANKDTVSWRE IVWAFHSGSQ 960
  961 DILLDLVSRQ FGGKMVWKAA RESGLFMWLS NTTAIRAQLE VVARNEYTKT EEKNPIDCSL1020
 1021 YYFALGKKNI LQGLWRMAHW NREQGATQRL LANNFQEPRW KTTALKNAYA LLGKRRFEYA1080
 1081 AAFFLLADHL RDAAMVCINQ VGDLQLAIAI VRAYEGDDGP VLKEILEERV LPEAASDGNR1140
 1141 WMASWAFWML GRRDMAVRSL ISPVETLIPS TPASPGSPGM IPLHAKSYLS NDPALVVLYK1200
 1201 QLREKTLQTL KGASKVSGPA EWGFVIRNAR LYDRMGCDLL ALNLVRYWEF LAEPPPAKGV1260
 1261 REISFDLQQN GVDYRKMLRR RSSLVVADMP IKTGVPPSSK APDAPKKPQP PPTMIHEPDP1320
 1321 NSLLDSFGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle