YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169762734
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDFQPRSQP ALRRRRQLIQ RLFLIGSVSL LLLVLIFPSW RATILPVVSL GLLSSTEDLQ  60
   61 LQTVRYYDLS AVQGTADGWE KEERVLMCTP LRDASSHLPM FFSHLRNLTY PHHLIDLAFL 120
  121 VSDSKDNTLE MLSSMLGELQ ADSDPHMPFG EISVIHKDFG QKVTQDVESR HGFAAQAGRR 180
  181 KLMAQARNWL LSATLRPTHS WVYWRDADVE TAPFTIIEDL MRHDKDVIVP NVWRPLPDWL 240
  241 GGEQPYDLNS WQESETALAL AETLDEDAVI VEGYAEYATW RPHLAYLRDP YGDPDMEMEL 300
  301 DGVGGVSILA KAKVFRAGVH FPAFSFEKHA ETEAFGKMAK RMGFSVVGLP HYTIWHLYEP 360
  361 SVDDLRHMEE MEQERKAREK EEKEQAERSE RVNTLFQDAK TESEIDNAFV RDDMETKGKE 420
  421 QKASEDSKKP EAESVEEMKA DKSSKAPEQE EQKAPEPLKN KNLKDAEEVS AVKPAKE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.78
Transmembrane Helix	21	40	0.79
Non-Cytoplasmic	41	477	0.99