YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83769901
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPLPEVQS AVDCASFNHT VLPFLSQLIT LPERLQVAAV AKDVDSLKDI YLSTNPFVTA  60
   61 LGFSLALAVF FLLFSEINRN YSQVDRFWPF LPAIYNVHFA VWARLSDLRT QHLDTIAVIS 120
  121 VLWSVRLAFN YWRKGGYQIG SEDYRWAIVR SKVNNRFVFF IFNIVFISLI QSLVLLLLAA 180
  181 PTYNFLLLSR LPGGKTFEVP DLVFSRIAFF FLIIEYFADQ QQWHFHCAKH EYQKTARIPD 240
  241 QYKGQFTPED LERGFTVSGL WSLSRHPNFL AEQAIWLTLY LWNCYRTESY AQWTGVGVLV 300
  301 LLLIFQGSTR LTESISSSKY PEYSEYQARV GRFIPRFSAK PKYKAKAKKK AKKTEKVEQS 360
  361 EEEEGKKHQ

Type	Start	End	Confidence
Cytoplasmic	1	55	0.57
Transmembrane Helix	56	75	0.92
Non-Cytoplasmic	76	86	0.50
Transmembrane Helix	87	105	0.60
Cytoplasmic	106	156	0.55
Transmembrane Helix	157	180	0.89
Non-Cytoplasmic	181	289	0.54
Transmembrane Helix	290	309	0.67
Cytoplasmic	310	369	0.45