YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220694388, gi...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTAETTPL LPQHQQQPAT SNTSPRANRR TVTFNPLTTV STYHDTTSTN APVKTLYSGP  60
   61 SSFPSSQETP QRPTGLSALN SKLRRRNSHG APYSAAPSMP AAPKVGPQRT TKKAQKLKLL 120
  121 PDPITEEAAE GEFPSDVYSQ IARIKEPTAR SHAARLGKSD RERLPRVTAY CTANSYRLDG 180
  181 AVRFLKSRSK TRGANPKLYD ECVYSPFDYQ YEEKQRSTSE NNVGMNNVGM RETFQRPSTE 240
  241 RRFSDSVVEI EDNTKSRRED LIDLRDSQAH QSENAIAETQ SETPDFDTTI HTPEVFLFDY 300
  301 GTVVIWGMSP AQESRFLSDV SKFATSILSP EDTQVENFNF YYAREYQARI YNDFISLREP 360
  361 RNHMIKLAIS HALAQSVKTS LFEDLVSETI SNTAPLPAQI AQTGSVNLTR RQINMQVGEL 420
  421 FILRINIHLQ GSVLDSPELM WAEPQLEPVY QAVRSYLEMD QRVSLLNERL DVIADLLAVL 480
  481 KDQLTHRHGE YLEWIVIVLI AAEILVAAIN IVVDLYAGVD

Type	Start	End	Confidence
Non-Cytoplasmic	1	493	0.72
Transmembrane Helix	494	517	0.57
Cytoplasmic	518	520	0.32