YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73967810
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADGQCSLP ASWRPVTLTH VEYPTGDLSG HLLAYLSLSP VFVIVGFVTL IIFKRELHTI  60
   61 SFLGGLALNE GVNWLIKHVI QEPRPCGGPH MAVGTKYGMP SSHSQFMWFF SVYSFLFLYL 120
  121 RMHQTNNARF LDLLWRHVLS LGLLTAAFLV SYSRVYLLYH TWSQVLYGGI AGSLMAVAWF 180
  181 AFTQEVLTPL FPRIAAWPIS EFFLIRDTSL IPNVLWFEYT VTRAEARNRQ RKLGTKLQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.73
Transmembrane Helix	31	53	0.91
Cytoplasmic	54	59	0.66
Transmembrane Helix	60	80	0.43
Non-Cytoplasmic	81	103	0.63
Transmembrane Helix	104	123	0.88
Cytoplasmic	124	132	0.68
Transmembrane Helix	133	156	0.86
Non-Cytoplasmic	157	163	0.55
Transmembrane Helix	164	183	0.92
Cytoplasmic	184	238	0.66