YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169773703
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYILEQLARL LDRPFFPWKN VLVGFSLGQF VLEGLLSLRQ YKILQRTKPP QVLENEVSQK  60
   61 VFDQSQSYGR AKAKFGFVAG LYGQIQNLAF IYGDILPKLW GASGLLLAQY FPSRFQGEIT 120
  121 QTLVFLFGFN LISTILSLPI SYYNTFVLEE KFGFNKQTLK LWVTDMLKGQ MLGIVLGTPI 180
  181 ISAVLKIVQK TGNSFFYYLW LFGIFVQIFA ITIYPIVILP LFNKLSPLEP GDLKTGVENL 240
  241 AKKLNFPLQE LHVIDGSKRS AHSNAYFYGL PWKKHIVIYD TLIEKSESEE VVAVLSHELG 300
  301 HWSLSHTTKL FGIAQFHMFY IFALFSVFVN NRSLYQSFGF INEQPIMIGF LLFSDALAPM 360
  361 DAVVKLLMNI LSRKFEFQAD AFAVKLGYSE KLASSLLKLQ IQNLSTMDAD WMYASYHYSH 420
  421 PILSERLKAL GWKGGKVTDY KAEDDEKPVK AADREL

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.44
Transmembrane Helix	16	38	0.55
Cytoplasmic	39	74	0.68
Transmembrane Helix	75	96	0.45
Non-Cytoplasmic	97	122	0.51
Transmembrane Helix	123	146	0.86
Cytoplasmic	147	165	0.62
Transmembrane Helix	166	188	0.84
Non-Cytoplasmic	189	195	0.62
Transmembrane Helix	196	218	0.92
Cytoplasmic	219	309	0.67
Transmembrane Helix	310	329	0.85
Non-Cytoplasmic	330	345	0.64
Transmembrane Helix	346	367	0.68
Cytoplasmic	368	456	0.74