YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83769091
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNAVSYKEW KDCAYELDEL EDNNSWKATF ESSEYDPHLV QERLKQLEEA RISCDVSRMI  60
   61 FLIRTSLSRD LGNMRNDSLY RHSHVGTKDL IDQYITTALD TISSLVDLSA KGRCDGLELK 120
  121 YILDQLLAAR QAFGRSALLF SGGATFGMNH IGVLKALWQA KLLPRIISGA SAGSIVCAVF 180
  181 CTRTDDELPL LLDTFAYGDF AVFNDPDQEE NILQKTARFL KYGSFLDISN LAKVMRNWLG 240
  241 DITFQEAYNR TRRILNICVS SAGIYELPKL LNYITAPNVL IWSAVAVSCS VPLVFSPFVL 300
  301 MAKDPETGEA VPWNDLHRQY IDGSVDGDLP MTRLSEMFNV NHFIVSQVNP HVVPFLPKYD 360
  361 GPTHGTPQTP FLTSRLFHTM THLAKDEILH RLTVLSELGI FPTSLTKTVS IVNQKYSGDI 420
  421 NIYPEILYTH FPAILKNPTR EFMLKACLSG ERATWPKLRR IRNHCAIELA LDSAIQQMRA 480
  481 RVAFMRIG

Type	Start	End	Confidence
Cytoplasmic	1	135	0.56
Transmembrane Helix	136	154	0.57
Non-Cytoplasmic	155	488	0.66