YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM54_ASPOR
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNFRLKLPS RNWMIFLTVT GSFTAALVYD RKQKKRAQQK WCDLVAHLSK ESLPVDQTRR  60
   61 KLTVFLSAPP GDGLRVAREH FKEYVKPILV AAALDYQVIE GRREGEIRAG LAERIRKFRR 120
  121 KSGEPSTVVE ETGIEEVVAD AREKIGVVEE PVPKGDLIIG RNTWKEYIRG LHEGWLGPLD 180
  181 PPQPPLSTDV PSPSEGAETN GSPDDTPTAE NSEKKEEPEK KDEKPSKPTG PTPAYITPAD 240
  241 YSSQSLPRSL PQSLDGSVPI QFPHILGFLN TPIRIYRYLN QRYLADSVGR EVAGIVLAST 300
  301 TRPYSDGSFS TDSELTPAGI DGAPASDNLL GGNYEQKTLL EEEEKDWHKS AHKKDEANPD 360
  361 KEREWVDSVV LDPRIAARMQ RYVLSPEDEA RSQRIAEGAE YILGEERPTP VPFWQRMWIK 420
  421 YGYGEDEETL KRKPIIGNID GEDDQ

Type	Start	End	Confidence
Signal Peptide	1	26	0.74
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	445	0.98