YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169771277
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKPRPHKKK ASKSKSKSVL SAGGSVSKQK MNEDPSKLLE QATTLLQTGQ PDVALPVAQR  60
   61 ALDLTPANSP AQLSALNIVA EIYVELGEID VARQHFMRAV ELDPTGAIPE SQGGGAEKFL 120
  121 WLAQLSELGG KDSVQWFEKG VSCLRQVIQQ LEQNPGPAEA IELEEKKRKM ANALCAVAEI 180
  181 YMTDLSWEED AEARCETLIT EALLVNSNAP EVLQTLASIR ISQLRTDDAR AALTKSLELW 240
  241 KDLPPEDPIV PDFATRISLA RLLMEVTMEL EALEVLERLI LEDDQSVEAW YLGGWCLYLL 300
  301 AEKKEAPKDD ELDSETPEAK RHASLVASRE WLKQSLTLYE SIQYEDVRLK EHADELVETM 360
  361 NKELGEDMED DMEGEEGDEG WEDEIESDGD QEMADS

Type	Start	End	Confidence
Signal Peptide	1	28	0.56
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	396	0.99