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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|169771233
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSATVDYS RDPAVDHSQA VSHEPEHSQT AAAENSTGSP DIKSQKENAS PVGGNAGSEP  60
   61 TAESTTGEVD EFGLPIRIRA RPVRSSESSD NEEFHDVEEA ASGPADKQPT SQDSKPVMNE 120
  121 IKLEAPQEES TKPVDKGKDE EKGTESLPAV EPHSVESPRE KDSSVPVGNE KHATSSGSLP 180
  181 DQEDCPPPPP YTEKPNAGNP STSTQSDAVQ KKRSSLKASE WSHQRLNESK HSEDEDEAES 240
  241 DGGWQDMPAI DEFDVYDDYG RLVARGAKPE DNDAVYKGLG GAGKGYTRVQ LDEDAQSATS 300
  301 LDEDTSYLFR EAAHNSTGVE GEELRDAVSQ LQATKDLLTE SQRIAYVGVT RLAIFQMTRD 360
  361 LDRVPSTKGT RKAKQKTIDS MRKWGQTIMA RIYAHMDIDA AEQVMIEQLA EHGVQPADLV 420
  421 RPLMQNARVK NPLAEELDTP KKSLSSPTTP SLKDEYRSSL SSDFDRSTSP PPYETHEGED 480
  481 LPEVRTPSQL PTSTKIDIDL RWTVLCDLFL VLIADSAYDA RSRSLLEKVG ESMEVSWLQI 540
  541 ARFEKRVVDA LEMQEEADKE TWDESDHMER RRKMALKRKY IVMGLATVGG GLVIGLSAGL 600
  601 LAPVIGAGLA AGFTTVGISG TGAFLGGVGG TAIIASGGTL TGGTIGLRAS NRRTGAVQTF 660
  661 EYRPLHNNKR VNLIVTVSGW MTGKVDDVRL PFSTVDPIMG DLYSVLWEPE MLRSMGDTIN 720
  721 ILATEALTQG LQQVLGSTVL VALMSSLQLP LVLTKLSYLI DNPWIVSLAR ANAAGLIMAD 780
  781 SLMERNLGKR PVTLLGFSLG SRLIFSCLKE LADRGAHGLV QNVYLFGSPI VANKDEYLKA 840
  841 RSVVSGRFVN GYSSNDWILG YLFRATSGGI MRVAGLAPVE GIPGLENFDV TKLVNGHMDY 900
  901 RAAMPRLLKE VGWEVLGDEF AELEDPDPEN HAERQRELIR EIDEARREAE AKPEKKRFGL 960
  961 FKRGKLAQKK GWETYDVERN NATPRDSSDS NGTGSVLFDI DAIRAELASE SIEVKQLEST1020
 1021 LPPMKLDLNS PSSSTPVTPT PSDSKDTTKA VNLTKSAPQS PPEPYSVPSA SHDQQPSTHK1080
 1081 EEEEIEMTFD TSYHEPLQRS HSFFEPTTAT SYDAHSTRPE LRSSSTTPAG LGIGAAAGVG1140
 1141 VGASALGALA LEPNAWADHD IGDGEEGEIH MSFE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle