YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238487150, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPTLPSWKD RTQNQFGKLQ IQVPWRSIQL LVPHRMRRKI RSKLRSRISP TSSISSLQTS  60
   61 FSPVDTLRSL QSHRWTTYDF QYLLLLIVAI FSLTVIESPG PLGKTAMFTA YIVALLLPIT 120
  121 RQFFLPFLPI AGWLLFFYAC QFIPSDWRPA IWVRVLPALE NILYGANISN ILSAHQNVVL 180
  181 DVLAWIPYGL CHYGAPFVVS LIMFIFGPPG IVPIFARTFG YISMLAVTIQ LFFPCSPPWY 240
  241 ENLYGLAPAD YSMQGNPAGL ARIDKLLGID LYTSGFKQSP VVFGAFPSLH AADSTLAALF 300
  301 MSLVFPRLKP LFVTYTLWMW WATMYLSHHY AVDLVCGGLL ATVAFYFAKT RFMPRVQTDK 360
  361 MFRWDYDYVE YGDSSRGYGY DLAGYDGDVN LDSDEWTVGS SSSVSSGSLS PIDDHYTWEG 420
  421 EALASPASDI ESGRHMFSP

Type	Start	End	Confidence
Cytoplasmic	1	77	0.85
Transmembrane Helix	78	100	0.84
Non-Cytoplasmic	101	118	0.52
Transmembrane Helix	119	142	0.79
Cytoplasmic	143	150	0.56
Transmembrane Helix	151	172	0.54
Non-Cytoplasmic	173	188	0.66
Transmembrane Helix	189	207	0.88
Cytoplasmic	208	213	0.52
Transmembrane Helix	214	236	0.70
Non-Cytoplasmic	237	285	0.62
Transmembrane Helix	286	305	0.66
Cytoplasmic	306	307	0.26
Transmembrane Helix	308	322	0.29
Non-Cytoplasmic	323	325	0.52
Transmembrane Helix	326	348	0.88
Cytoplasmic	349	439	0.69