YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169769759
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	178	0.99
Transmembrane Helix	179	199	0.92
Non-Cytoplasmic	200	216	0.81
Transmembrane Helix	217	236	0.91
Cytoplasmic	237	267	0.90
Transmembrane Helix	268	287	0.87
Non-Cytoplasmic	288	293	0.79
Transmembrane Helix	294	317	0.89
Cytoplasmic	318	323	0.85
Transmembrane Helix	324	343	0.90
Non-Cytoplasmic	344	348	0.74
Transmembrane Helix	349	369	0.90
Cytoplasmic	370	382	0.82
Transmembrane Helix	383	404	0.92
Non-Cytoplasmic	405	421	0.87
Transmembrane Helix	422	442	0.92
Cytoplasmic	443	452	0.79
Transmembrane Helix	453	474	0.92
Non-Cytoplasmic	475	479	0.82
Transmembrane Helix	480	500	0.94
Cytoplasmic	501	606	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDPGSSGKG PKKSKIKLGD PNLCNPRSNR RGFPEDERSK STMPKKTLKD HSRMGLSPSG  60
   61 NHHRRRSSVL TATGGPSQVG PAEQRDDNPR TNADPVNYKR EEQKAAEDAD VSDLSSIAES 120
  121 SEDDLQDDEE TGLTAKQRRQ RRRRRKQRRQ LDARIAGVKG SQSDVFSVGL ADRNVMRRLL 180
  181 VNAGLILMWY FFSLAISIYN KWMFSEDDVV FPFPLFTTSL HMLVQFSLSS FILYMIPSLR 240
  241 PRAPSSSPSG SPMRQQDGSE NSVVSKVFYF TRLVPCGAAT SLDIGLGNMS LKFISLTFLT 300
  301 MCKSSALAFV LLFAFLFRLE TPSAKLIVII ATMTIGVVMM VAGETAFNVV GFLLVIASAF 360
  361 FSGFRWGLTQ ILLLRHPATA NPFSTLFFLT PVMFISLITI ALAVEGPSQI VTGFVALSDV 420
  421 HGGMFATFLL IFPGILAFCM ISSEFALLKR SSVVTLSICG IFKEVVTISA AGVVFHDQLT 480
  481 LINIVGLVIT ISSIGSYNYM KISKMRAEAR KGTWEPEPDS DSETEDSDPS RGREGYHRVA 540
  541 NPETSFESFW RSEIISCREA VTGINADSDA GMILLWDHGE EIAEFSKLAA DCSSVAAHRL 600
  601 KNRRDC