YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169769683
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLFAKRLT CFYCGRRSAQ TEKGSIRKWR CNACEAINYL DEKGQIADPP AADTNPNVYG  60
   61 SDVSSTPFES TDITGSGLFC AQCIRNQHLF TSALAAYFPP TDDPNYGAYE QEYPKFRKNL 120
  121 EERYPQVCAK CEPRVKDRIR QAGYEAKSDH LRRMMDRSKA GRAARHARKW NWRSLLLYAG 180
  181 AMTYWASVAG QLSWNLVGAL ATDELLRDPD DLLTPASIVK CVQQTLETRR MPSYCFVDLA 240
  241 PYAGLSLVAG IISAWYNPKL RFKVEGRAGR FVGLGEYYQV QLIVMVVRCV FWALLRDPSA 300
  301 NGLQSNLPPT LHTFMFIFTA LSSLFYSLGA LRSMTLALW

Type	Start	End	Confidence
Cytoplasmic	1	169	0.99
Transmembrane Helix	170	192	0.83
Non-Cytoplasmic	193	238	0.94
Transmembrane Helix	239	257	0.95
Cytoplasmic	258	276	0.88
Transmembrane Helix	277	295	0.95
Non-Cytoplasmic	296	310	0.90
Transmembrane Helix	311	331	0.91
Cytoplasmic	332	339	0.80