YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73967531
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.59
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTPQGAM TPAHACAGCS GAFVGQRCQA PNPCLSAPCK NAGTCHTVDR GGLVDYACTC  60
   61 RLGFSGPLCL TPRDNACLST PCRNGGTCDL LTLTEYKCRC PPGWSGKTCQ QADPCASNPC 120
  121 ANGGQCLPFE ASYICGCPPG FHGPTCRQDV NECSQSPGLC QNGGTCHNEV GSYRCTCRAT 180
  181 HTGPHCELPY VPCSPSPCQN GGTCRPTGDT THECACLPGF TGQNCEENID DCPGNNCKNG 240
  241 GACVDGVNTY NCRCPPEWTG QYCTEDVDEC QLMPNACQNG GTCHNTHGGY NCVCVNGWTG 300
  301 EDCSENIDDC ASAACFHGAT CHDRVASFYC ECPHGRTGLL CHLNDACISN PCNEGSNCDT 360
  361 NPVNGKAICT CPSGYTGPAC SQDVDECSLG ANPCEHAGKC INTLGSFECQ CLQGYTGPRC 420
  421 EIDVNECISN PCQNDATCLD QIGEFQCICM PGYEGVHCEV NTDECASSPC LQNGRCLDKI 480
  481 NEFLCECPTG FTGHLCQYDV DECASTPCKN GAKCLDGPNT YSCMCTEGYT GLHCEVDIDE 540
  541 CDPDPCHYGV CKDGVATFTC LCQPGYTGHH CESNINECHS QPCRHGGTCQ DRDNAYLCSC 600
  601 LKGTTGPNCE TNLDDCASSP CESGTCLDRI DGYECACEPG YTGSMCNVNI DECAGNPCHH 660
  661 GGTCEDGINS FMCRCPEGYH GPTCLSEVNE CSSNPCIHGA CRDSLNGYKC DCDPGWSGAN 720
  721 CDVNNNECES NPCANGGACR DMTSGYVCTC REGFSGPNCQ TNINECASNP CLNQGSCIDD 780
  781 VAGYKCNCPL PYTGATCEVV LAPCAPSPCR NGGACKESED YESFSCICPT GWQGQTCEVD 840
  841 INECVKTPCR NGASCQNTNG GYRCHCRAGY TGRNCETDVD DCRPNPCHNG GSCTDGVNTA 900
  901 FCDCLPGFQG PFCEEDINEC ASNPCRHGAN CTDCVDSYTC TCPTGFSGIH CENNTPDCTE 960
  961 SSCFNGGTCV DGINSFTCLC PPGFTGSYCQ HDINECDSRP CLHGGTCQDS YGTYRCTCPQ1020
 1021 GYTGLNCQNL VRWCDSSPCK NGGKCWQSNT LYRCECHSGW TGLYCDVPNV SCEVAAQRQD1080
 1081 VNVTHLCRNG GLCMDAGNTH HCRCQAGYTG SYCEDQVDEC SPSPCQNGAT CTDYPGGYSC1140
 1141 ECVAGYHGVN CSEEMNECLS HPCQNGGTCI DLINTYKCSC PRGTQGVHCE VNVDDCSPPI1200
 1201 DPVSRGPKCF NNGTCVDQVG GYSCTCPPGF VGERCEGDVN ECLSNPCDIR GTQNCVQRVN1260
 1261 DFYCECRAGH TGRRCESIIN GCKGRPCQNG GTCAVASNTA RGFICKCPAG FEGATCENDA1320
 1321 RACGSRRCLN GGTCISGPRS PTCLCLGPFT GPECQFPAGS PCVGGNPCYN QGSCEPTTES1380
 1381 PFYRCLCPAN FNGLLCHILD YSFGGGLGLD IPPPQIEEAC ELPECHEEAG NKVCSLACNN1440
 1441 HACGWDGGDC SLNFNDPWQN CSQSLQCWKY FSNGHCDSQC NSAGCLFDGF DCQRAEGQCN1500
 1501 PLYDQYCKDH FGDGHCDQGC NSAECEWDGL DCAEHVPERL AAGALVLVVL TPPAQLRNNS1560
 1561 LHFLRELSRL LHTNVVFKRD AHGQPMIFPY YGREEELRKH PIKRAVDSWA VPGALLNRVE1620
 1621 AALLPGGAGR RRRELDPMDI RGSIVYLEID NRQCVQSSSQ CFQSATDVAA FLGALASLGS1680
 1681 LNIPYKIEAV QSETVELPPP PQLHFMYVAV AAFVLLFFVG CGVLLSRKRR RQHGQLWFPE1740
 1741 GFKVSEASKK KRREPLGEDS VGLKPLKNVS DGALMDDNQN EWGDEDLEAK KFRFEEPVVL1800
 1801 PDLDDQTDHR QWTQQHLDAA DLRVSAMAPT PPQGEADADC MDVNVRGPDG FTPLMIASCS1860
 1861 GGGLETGNSE EEEDAPAVIS DFIYQGASLH NQTDRTGETA LHLAARYSRS DAAKRLLEAS1920
 1921 ADANIQDNMG RTPLHAAVSA DAQGVFQILI RNRATDLDAR MHDGTTPLIL AARLAVEGML1980
 1981 EDLINSHADV NAVDDLGKSA LHWAAAVNNV EAAVVLLKNG ANKDMQNNKE ETPLFLAARE2040
 2041 GSYETAKVLL DHFANRDITD HMDRLPRDIA QERMHHDIVR LLDEYSLVRS PQLHGPALGG2100
 2101 TPTLSPPLCS PNGYLGNLKP SVPGKKARKP STKGLACGGK ETKDLKARRK KSQDGKACLL2160
 2161 DSSSVLSPVD SLESPHGYLS DVASPPLLSS PFQPSPSVPL GHLPGMPDAH LGVSHLSVAA2220
 2221 KPEMATLAGG GRLAFEAGPP RLSHLPVASS TGTVLGTGSG STSGSGGGAV NFTMGGATAL2280
 2281 NGQCEWLSRL QNGLVPNQYN PLRGNVAPGP LSSQAPGLQH SLMGPLHAGL PTTAALSHMM2340
 2341 SYQALPNTRL ASQPHLVQTQ PLQQVPQQQQ NLQMPQPGLQ PPPSLQPPTI QQPQSLPPPP2400
 2401 QPPQPHLGVS SAASGHVGRS FLGGEPSQAD VQPLGASGLA VHTILPQDSQ ALPTALPAAL2460
 2461 APAMTTAQFL TPPSQHSYSS SPADNTPSHQ LQVPEHPFLT PSPESPDQWS SSSPHSHVSD2520
 2521 WSEGISSPPT STQSHIAHIP ETLK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle