YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169769330
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	166	0.99
Transmembrane Helix	167	187	0.91
Non-Cytoplasmic	188	194	0.79
Transmembrane Helix	195	216	0.93
Cytoplasmic	217	226	0.92
Transmembrane Helix	227	249	0.89
Non-Cytoplasmic	250	258	0.77
Transmembrane Helix	259	281	0.90
Cytoplasmic	282	290	0.86
Transmembrane Helix	291	313	0.89
Non-Cytoplasmic	314	357	0.73
Transmembrane Helix	358	379	0.87
Cytoplasmic	380	443	0.64
Transmembrane Helix	444	466	0.86
Non-Cytoplasmic	467	480	0.52
Transmembrane Helix	481	501	0.73
Cytoplasmic	502	510	0.43
Transmembrane Helix	511	537	0.83
Non-Cytoplasmic	538	544	0.46
Transmembrane Helix	545	567	0.85
Cytoplasmic	568	573	0.41
Transmembrane Helix	574	593	0.90
Non-Cytoplasmic	594	606	0.41

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMSYKYRRQ ARNLAWYDQD GEPSTHNPFK KFRRQRPRRT DSIQLESKLT PIRTAGDVPL  60
   61 DEERRRRRDM TDGLVGPEHS DTFPPESSGT DQGTPYRAGR EPSMHSNEPI NIPAQTGLDE 120
  121 DQMGGPRKRR TFASGFGDKS LDGDMNSNSA EDVKEKPKFT AMGQLKATLF NSWVNVLLLA 180
  181 APAGIALNYV DVDPVAVFVV NFIAIIPLAA MLGYATEEIA MRTGETIGGL LNASFGNAVE 240
  241 LIVAIIALVD DEVVIVQTSL IGSMLSNLLL VMGMCFFFGG VNRLEQHFNP VVAQTAASLL 300
  301 ALAVGCLIIP TAFHNWSGGK SMNSPLGYQM LIRLQQATVV LQNSREVSYV RRQLTDHFSQ 360
  361 IVGTSIIMLV VYGCYLFFQL GSHTEMYNSP SPKVEKRRGK VNEGDTHRGI AQIGKMTATL 420
  421 AGQNAQQMQL QDPDEEEEEP QLSIWVAVLT LAIATALVAL CAEFMVDSIN AITDRGGISK 480
  481 TFVGLILLPI VGNAAEHATA VTVACKDKMD LAIGVAVGSS MQIALLVLPL IIVIGWGMGN 540
  541 NDMTLYFDAF QVILLFVAVL LSQVNYLIAD GKSHWLEGVL LMMMYLIIAV AAWKRCKLDT 600
  601 KTSEDF