YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|169768594
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGAFPDLES SNKAMDAAFD FESAASSPIP QYISIKTIRL SVSALPSQGK SPMNQWAGRS  60
   61 PSSLLEESFG GINMNASSPL NSNLNFVPNN FTNFGLSFAP SPPQSNMKSE TTQRHVLTVH 120
  121 PTSLKSRVET QIPIRLTLFP LPSGVKKIRL PSHTISKPKF LAPASADRAP DTVELHTSLV 180
  181 CTSAMQDQEK LKKAFARARG EPRYRSSSSS PHPVDDVQED DKPLDGGEVK ICSGCIQRER 240
  241 KRAFRKKQRK PEEDELFQKD EEKRVIVFNT NEIKDWTEPS KNALPNYGDI PIPAVPAGAM 300
  301 QVELPMRIAC YCRHQNEKLG FQVIFTVKDY KDNVIAQAIT NSIMITDDHK THAPPAPPAP 360
  361 GPSPSLPDGT QLPGVGVFPS GPVLDSGKSS ASSQPSSATD LQGLQQRFNT QYQLNSGSFA 420
  421 MPQNSSTSST SRNLSRQTSP NDFQGPMSKR RKHSNSGRLP SELTMTKLDN AQPSTGVSGT 480
  481 PALNNEPPFS APRGFASPVE RPFVTASAMS GQFPNSPPTP NSGDSNPFFN PNSQQQQSLD 540
  541 SFIQQQLMSA PNSAQPSRPG TPGPSTRSNF QEQNLSLPLG PNTSTPMWPP LTNAGNRLPS 600
  601 VIHKLVPAEG SITGGTEVTL LGSGFYPGME VVFGDTLATT TTFWGDKCLN CLTPPALQPG 660
  661 LVAVVFKHEH PTFGQVQTPQ PLMPKQQQFF RYVDDRELQM YRLALGILGQ KLGSQADAFQ 720
  721 TAQQIMGSDP KSVFGLQKDF QGGSGGGYQR QVPGLESQGK LGDMDSKMLT YLEFVDLDDS 780
  781 PRPPKYNSRC ATGQTLLHFA ASLGLTRFVA GLLARGANPD VQDNTGNTPM HLAALNGHAH 840
  841 IVNRLRLAGA NVNNRSIRGF TPADIASTLP AHQAALVPAQ HRRSRSVGSL ASSRRRHSSS 900
  901 ASLHSLWESS SGSFDEAIDD SSDLDEDDSD DLEFTVSRRS SMHHDVPAPL PNADQASAPE 960
  961 DARPFSPPAA LVAWRNQLQT QINQFQQSVA NAFPNLPALP PMPALPDYQA HPMMRRITNL1020
 1021 VPHRPSTARS AKEGWWDLLT GNSAPNATDL PSYEELYPQQ DEQGGEDVTR MKKSSMLQAA1080
 1081 TDAVLDQHFE AQASAQASTS RTVTAKQENE DLKDIRIGKR VISREQQKHL REQQAQRMKG1140
 1141 LGSDRNLYFI WIPLLVLVIC AWARSYVPGI WQGFSSGVEF VKTRYAQRAL DLGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle