YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169768520
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEDYLHKGC HALVKGVNPA YGYQPSLAAG IVFCVLFGTS MVAHTAQSFW SRKWWCLLFA  60
   61 IGCLTEVLGW AARTWSAECP YQTDAFLMQI STLIIGPTFF TAGIYVLLGQ LIALLGPESS 120
  121 ILRPSWYLWI FCTCDIVSLV VQAVGGGMAS SAASEVDGDT APGTNTMVAG IVFQMAAITA 180
  181 FAFCGIDFLV RCRRPQLRAR FTPRMRLLVL ATTFFVVCIY VRSIYRTIEL LEGWSGYLIT 240
  241 REWFFIGLDG IPMVLAVVVF NIFHPYWLLP REKEARKAES WVSLTRPENE YPRPQSTTSN 300
  301 RYTRYPSPNS TPNRPPLLKD LTRSLIRESL NI

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.90
Transmembrane Helix	26	45	0.91
Cytoplasmic	46	53	0.87
Transmembrane Helix	54	74	0.93
Non-Cytoplasmic	75	92	0.80
Transmembrane Helix	93	114	0.88
Cytoplasmic	115	125	0.89
Transmembrane Helix	126	146	0.95
Non-Cytoplasmic	147	166	0.88
Transmembrane Helix	167	190	0.89
Cytoplasmic	191	206	0.88
Transmembrane Helix	207	225	0.96
Non-Cytoplasmic	226	244	0.92
Transmembrane Helix	245	268	0.90
Cytoplasmic	269	332	0.99