YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57091801
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHGAHITT AAVVDDQPSI FEVVAQDSLM TAVRPALQHV VKVLAESNPA HYGFFWRWFD  60
   61 EIFTLLDLLL QQHYLSKTSA SFSENFYGLK RIVMGDTHKL ERLASAGLPK KQFWKSIMFL 120
  121 VLFPYLKVKL EKLISSLREE DEYSIHPPSS RWKQFYRAFL AAYPFVNMAW EGCFFVQQLR 180
  181 YILGKAQHHS PLLRLAGVRL GRLTVQDIQA LEHKPAEASM MQQPARSVGD KIKSSLKKAL 240
  241 GGAALTLSTG LSVGVFFLQF LEWWYSSENQ ETIKSLTALP TPPPPVHLDY NSDSPLLPKM 300
  301 KTVCPLCRKT RVNDTVLATS GYVFCYRCVF NYVRSHQTCP ITGYPTEVQH LIKLYSPEN

Type	Start	End	Confidence
Cytoplasmic	1	239	0.68
Transmembrane Helix	240	261	0.77
Non-Cytoplasmic	262	359	0.91