YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73966100, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLSGELAR DLERSLPAVA SLGSSLSHSQ GLSSHFLPPP PEKRRAISDV RRTFCLFVTF  60
   61 DLLFISLLWI IELNTNTGIQ KNLEQEIIHY NFKTSFFDIF VLAFFRFSGL LLGYAVLRLR 120
  121 HWWVIAVTTL VSSAFLIVKV ILSELLSKGA FGYLLPIVSF VLAWLETWFL DFKVLPQEAE 180
  181 EERWYLAAQA AVARGPLLFS GALSEGQFYS PPESFAGSDN ESDEDVGKKS FSAQEREYIH 240
  241 QGKEAMAVVD QILAQEENWK FEKNNEYGDT VYTIEVPFHG KTFILKTFLP CPAELVYQEV 300
  301 ILQPERMVLW NKTVTACQIL QRVEDNTLIS YDVSSGAAGG VVSPRDFVNV RRIERRRDRY 360
  361 VSSGIATTHC AKPPTHKYVR GENGPGGFVV LKSASNPRVC TFVWILNTDL KGRLPRYLIH 420
  421 QSLAATMFEF AFHLRQRITE LGARV

Type	Start	End	Confidence
Cytoplasmic	1	52	0.95
Transmembrane Helix	53	73	0.92
Non-Cytoplasmic	74	95	0.89
Transmembrane Helix	96	116	0.87
Cytoplasmic	117	121	0.79
Transmembrane Helix	122	142	0.94
Non-Cytoplasmic	143	149	0.79
Transmembrane Helix	150	170	0.91
Cytoplasmic	171	184	0.83
Transmembrane Helix	185	204	0.59
Non-Cytoplasmic	205	445	0.71