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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73965331
Protein type: Globular with Signal Peptide
Type Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASARLLRA VIMGAPGSGK GTVSSRITKH FALKHLSSGD LLRDNMLRGT EIGVLAKTFI  60
   61 DQGKLIPDGV MTRLALHELK NLTQYSWLLD GFPRTLPQAE ALDGAYQIDT VINLNVPFEV 120
  121 IKQRLTARWI HPASGRVYNI EFNPPKAVGI DDLTGEPLIQ RDDDKPETVV KRLKAYEVQT 180
  181 QPVLEYYRKK GVLETFSGTE TNKIWPHVYA FLQTKVPQIN QKASVTPLGK VYITTRREVV 240
  241 VAFAGEGRLG LGILGKRLEP GASEPSRTPA VPSSQRWKLR FPRGPVGPPA LGDPRNPRNP 300
  301 RNPGLRTLLN SCMNRSRHLP TPQRRGGGFN NLRSSAPAQM SAPPKQLTET LVPFLDTDSN 360
  361 GELPPETDQY LNDKPTLHER LLQVVPALGD ENQAIVLPPP LKSKMKTGDE PEDHQSLEIL 420
  421 APPLDSQGLN QRKFFVSSPN LDKDLVQHRR LAKVVIGTPN QFANKELLEQ LQDDYSDSGM 480
  481 DIIYPEENRP MDFPGGPDQP PELPEELEIS SLLQETPAGP LQSTVEEPEP FVPGVEAQAK 540
  541 HPESPEETET PPLLQDALSQ PPEILKEAGN SVSPQEAPAE PSSTPEVQQE ASAQPTEAPE 600
  601 EVEPWTPQEA PAQPPEEKVP PQEVNVPSLS QNEAQRPKLH NVTVKPVDLA LTVTVTQPPQ 660
  661 HPKKAEPAIL QEQPAQPPEL SLGEVEPIPT QQEHPAQPLE HHEVKVAPPG HHQVQQLNLP 720
  721 NITVKPAGVQ VTVTPEPTTE VGPLPVQRES VTQPSVPLNV EPFATQHEAP TLPPQSPEEN 780
  781 EHLPFQQETP TESPESPTQE KPPTQQETPV QTPGEVKPST TQQDTLAQDS QAPEEGESPS 840
  841 TQEEALAQLP GTQEEKEPSP PQQEAPAELP QIPEEGEPSS IQEESQDHHA QTPEKAKPSS 900
  901 TQQEAPTQYP QASEEGEPSP AQEEAPTQFP QIHVKSGFPE QHPAPAENVE PYPDQQGVPE 960
  961 QTGDLPEETE LSPSQQWSSS LPQMPVVGVE PSPVQPEHQA QPPESSTDIV AQPPVHHEVT1020
 1021 SSRLGPGEAQ HPMLPNITAK PVDLEVFITP VPTKFEHSPG QQEASAQAPV PPEQVEFSPA1080
 1081 QSELLFQSPE TLEDEFPPGQ QELIVKTPDP PKEMEPTSAQ QEAPAEPSEP HKEIEPSSNE1140
 1141 YTVSAHSPGP TEDVKPPTQP EVPAQPPVPQ QVPAISPEPR QEVEPSATQQ ESPAQSLELA1200
 1201 DKVEPLPVSQ KTPSQLLQFP EKVESSPVLQ EAPSLPLEPL KEVELSPAQQ VAQTQPSELP1260
 1261 EKLESFPILQ QASTQSPEPH QESEPSPAQP PEPSKEVEPQ LPVHNEMTVP PQGQDQAQRS1320
 1321 SLPSVTAKPV DLEFTVPPEP STTLQQTLAP PEDPEVTLPH PEHVEAQSPN LSEVTVQPLD1380
 1381 LELTITPEPI TEVETSTMQE TPGPPLEPPD ESVMQPPMYR EVTVPTPGQD QARHLLLPNV1440
 1441 TVQPLDLELT LTPEPTTKVE HSTTVSKTTV PPEDMEVTFA HQEQVQAQHP ILTEVTVQPL1500
 1501 DLGLTITSEF TKEIELPQPM QETPIQLPEP PKEVTVAQSP VYQEETIPTP GWDQIQHPSS1560
 1561 PSVTVQPLDL ELTVSPEPTT EVEHSTALKK TIAPPKDVEV TFAHLEQVLS RRPNLTKVTV1620
 1621 QPLDLELTRT PASTTEIEPS PTMPLELPKE LVAQPSIYQE AAVPTSAQDQ AQHLWSPNVT1680
 1681 TQPLALELTI SPKPTTEVEQ STTLHQTTAP PKDLEVTFPP SEQVQVQHST LNKVKVKPLD1740
 1741 LGLTITPEPT TETKPSPTMQ ETPTQPPEPP KEVVVQYPFH QEGTVPTLGQ DQAPYPTLPS1800
 1801 VTVHPVDMGL TITSEPTTQV ERSTTTKTTT PPPKDLEMTL AHLEQIQRQH PNLTEVTVPP1860
 1861 MDLEITVTAG SNMEVEPSPA RQETPTQPPE PPKEVKVQYP FHQEVMSPTP SKGEVQLPES1920
 1921 PSITFHNGGL GLTITPEPIT EAKHSATTKK TTAPSPADLE VTLAHRERVQ SQQPNLTKVT1980
 1981 VPPMDLEITV SHQPESSESV LPPTTQPSVV HFAKYFPEKA YTTFTEQPEQ SVTTNVNICE2040
 2041 LCTCKDETLS CTGFSPKQRL RRVPVPEPNT DNNTFTIL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle