YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82948068, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.66
Transmembrane Helix	51	73	0.68
Non-Cytoplasmic	74	79	0.44
Transmembrane Helix	80	99	0.32
Cytoplasmic	100	140	0.76
Transmembrane Helix	141	159	0.61
Non-Cytoplasmic	160	214	0.71
Transmembrane Helix	215	239	0.87
Cytoplasmic	240	244	0.62
Transmembrane Helix	245	266	0.87
Non-Cytoplasmic	267	277	0.50
Transmembrane Helix	278	299	0.87
Cytoplasmic	300	319	0.61
Transmembrane Helix	320	337	0.69
Non-Cytoplasmic	338	338	0.20
Transmembrane Helix	339	356	0.77
Cytoplasmic	357	357	0.30
Transmembrane Helix	358	390	0.72
Non-Cytoplasmic	391	397	0.62
Transmembrane Helix	398	417	0.89
Cytoplasmic	418	426	0.63
Transmembrane Helix	427	446	0.90
Non-Cytoplasmic	447	455	0.57
Transmembrane Helix	456	473	0.94
Cytoplasmic	474	498	0.78
Transmembrane Helix	499	518	0.87
Non-Cytoplasmic	519	567	0.75
Transmembrane Helix	568	589	0.91
Cytoplasmic	590	608	0.84
Transmembrane Helix	609	634	0.83
Non-Cytoplasmic	635	640	0.61
Transmembrane Helix	641	670	0.59
Cytoplasmic	671	672	0.40
Transmembrane Helix	673	688	0.52
Non-Cytoplasmic	689	697	0.46
Transmembrane Helix	698	716	0.72
Cytoplasmic	717	726	0.60
Transmembrane Helix	727	748	0.90
Non-Cytoplasmic	749	751	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAQEGVAHA AAAVKVDAVI EDADLQHVED TVHHLTHHQI VGGLVDGQME FGIGGGLLGG  60
   61 VVQGVGLFHG LHAGAQPGQI LGRGALGGQG GGIAGHHAAE LEIIEDRFRM RLQQAGKRIG 120
  121 RRFGGGPGGR RGGGVHHDMR IGRCWVIANH GFLAWQLFHL HRKTNRVIHA NRLVKLCYHV 180
  181 QETFNTNTSP ASSADARSNL RGGTMQAWMQ VYDPAGNLWL SSLIAAIPII FFFVALAILK 240
  241 LKGHVAGTIT VLLSIAVAIV FYKMPVAAAV MAGVQGFLFG LWPIAWIIIG AVFLYKVTVK 300
  301 TGQFEIIRSS VVSITADQRL QMLMIGFSFG AFLEGAAGFG APVAITAALL VGLGFNPLYA 360
  361 AGLCLIANTA PVAFGAMGIP IIVAGQVSGL DAFKIGAMAG RQLPLLAVFV PFWIIFIMDG 420
  421 FKGVRETWPA ILVAGGSFAF GVWFTSNYIG PELPDITSAL ISLVCITVFL KFWQPKNIFR 480
  481 FKEEGEDEKH SHDYTTGQVA RAWAPFLILT AVVTVWSLKP FKAMFAKGGE LVFTNINWEV 540
  541 PALHNLVAKV PPIVAAAKAV PAVYTLNLVS ATGTAILISA IITIIMLGMK GSEGLKTFGE 600
  601 TLNELKRPIY TIGTVLAFAY VANASGLSTT LALLLTGAGD FYPFFSPVLG WLGVFLTGSD 660
  661 TSSNALFGAL QATTAHQLGI SDILMVAANT TGGVTGKMIS PQSIAVACAA VGLVGHEANL 720
  721 FRFTLKHSVF FVCIIGVITT LQAYVLTWMI P