YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91984075, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSHDDKTM PLLEHLIELR RRLIWSAIAF IVAFGICYYF SNEIYEFLLE PYSKAALAKG  60
   61 GNRRLIYTAP TEAFFTFMKV SAFAGAALCF PIWAGQLWAF VAPGLYKHEK QAFLPFLVAT 120
  121 PVLFALGASM VYFLVLPNLY TYLLGFENLV GGPSTLPIQM EAKVNESLSL IMTLIFAFGL 180
  181 AFQMPVLLTL LARVGLVTAA GLADKRRFAI VGNFVFAAVV TPPDVVSQLS LAIPMVGLYE 240
  241 ISIISARWAE KKREQALNDD GEDDATHDDT DFNA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	42	0.90
Non-Cytoplasmic	43	79	0.95
Transmembrane Helix	80	102	0.87
Cytoplasmic	103	112	0.88
Transmembrane Helix	113	136	0.92
Non-Cytoplasmic	137	169	0.89
Transmembrane Helix	170	197	0.78
Cytoplasmic	198	207	0.79
Transmembrane Helix	208	226	0.68
Non-Cytoplasmic	227	228	0.44
Transmembrane Helix	229	248	0.43
Cytoplasmic	249	274	0.58