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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83311112, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.55
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLTQFGIR AKLILIFVLI KVIPLLVLAA FAWRGQAWLA ERVSENVTGM TRAMRETTEQ  60
   61 VVTSTTNSAI KALDDAARES LERLTTDTAR DVAAFLYDRD GDIRSAALIE PGEEVYRRFL 120
  121 QGRTRPIERH YPWVLTPDGS KWVPGPEAVP HYDAPPVQSS IEENRRNFNY RPVTEGGLKV 180
  181 ERPLFLEMTF IGLDGREKVK VTTSDLVSRD LKDVSRRENT FVKAETYFND LKALGPDRIH 240
  241 VSDVIGAYVR SPVIGPFTPK AAAAKGIEFA PEKAAFAGTE NPVGTRFRGL VRWAMPVVRG 300
  301 GKTMGWVTLA LDHDHLMEFT DHILPTGDRY SPIADAASGN YAFIWDYKGR SVVHPRHYFI 360
  361 TGYDPETGDP AVPWLDTGLY AQWKDSGKPI AEFLRTAPTF LEQSLKKKGA PELVRQGLLG 420
  421 LDCRYLNHAP QCTGWMDLTS QGGSGSFEIL WSGLWKLTTA ATIPYYTGPY GRSPRGFGFV 480
  481 TIGANVDDFH AAAAKEKEHT DQILALRDRD LQAKYDTVMA LIAAQVESLA RELSISTLIM 540
  541 IALVVGIAVW MASFLTRRIT AVVGGIHRFS EQETEYRLPV QGNDEMASLA ISFNQMADRV 600
  601 AESFVRLDEA RKRAEEASRM KSEFLANMSH ELRTPLNGII GFSELIRDEA ADDETRENAD 660
  661 IIEKSSRHLL ELVNSILDIA KIEAGAMTLS IQEVKLAPLV AEAAAVHQSA AQGKGITLSS 720
  721 RVAGDCPATI QADPLRLRQI LHNLLSNAVK FTETGEVALS VDLQPDHLVF KVSDTGAGIP 780
  781 EAMLHAIFEK FRQVDSFLTR SHSGTGLGLT LARHLVELMG GVIGVESTVG KGTTFHFTLP 840
  841 LHQTETPS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle