YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP1_MAGSA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.97
Transmembrane Helix	19	39	0.83
Non-Cytoplasmic	40	63	0.88
Transmembrane Helix	64	86	0.92
Cytoplasmic	87	113	0.91
Transmembrane Helix	114	136	0.85
Non-Cytoplasmic	137	154	0.82
Transmembrane Helix	155	174	0.95
Cytoplasmic	175	184	0.75
Transmembrane Helix	185	206	0.87
Non-Cytoplasmic	207	224	0.80
Transmembrane Helix	225	245	0.90
Cytoplasmic	246	261	0.73
Transmembrane Helix	262	283	0.88
Non-Cytoplasmic	284	301	0.92
Transmembrane Helix	302	326	0.86
Cytoplasmic	327	353	0.94
Transmembrane Helix	354	374	0.90
Non-Cytoplasmic	375	380	0.81
Transmembrane Helix	381	402	0.95
Cytoplasmic	403	410	0.78
Transmembrane Helix	411	431	0.94
Non-Cytoplasmic	432	438	0.81
Transmembrane Helix	439	457	0.97
Cytoplasmic	458	640	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPATEKPA GEKSGTEKIG VKRLGALSLA AIGVVYGDIG TSPLYTLKEC FDPDHGIPSS  60
   61 PENVIGIASL VFWAIILVVT IKYVLFVMRA DNRGEGGILA LLALAIRATG GDRGLVGPLV 120
  121 GLGLFGAALF IGDGMITPAI SVLSAIEGLE VGTPFFAPYV VPLTLIVLVA LFTIQSHGTE 180
  181 LVGRLFGPVM VVWFLTIAAL GLTEVVGHPH ILMAVNPAYG LTFLFTHGWI AFVVMGSVVL 240
  241 AVTGGEALYA DMGHFGKLPI QMAWFALVLP ALTLNYFGQA ALILDNPEAA RNPFYMLVPG 300
  301 WGLYPMVILA TLATVIASQA VISGVFSLSR QAVQLGYSPR LDIRHTSDEE EGQIYIPRAN 360
  361 WGLLLGIVAL VVGFKSSSNL AAAYGIAVTG TMAATTILAL VVAHRSWNWP LWLCLGLGAV 420
  421 FLAVDLGFLG ANLLKVTQGG WFPLAVGLGM LLLMATWRKG RDILSRRLAD GALPLDMFMQ 480
  481 QQKDSTSILR VRGTAVFMTG GTDTVPIALL HNLKHNKVLH QRVVFLTVIT EDIPRVSARD 540
  541 RVVVEGLAEG FYRITVRYGF FQEPDIPKVL RLCKAFGLEF EMMDTSFFLG RETLVPSTHP 600
  601 EMPEWRERLF VIMSRNAVSA TDFFRIPAGR VVELGIQVQL