YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83309254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.57
Transmembrane Helix	6	28	0.81
Cytoplasmic	29	30	0.41
Transmembrane Helix	31	46	0.47
Non-Cytoplasmic	47	48	0.57
Transmembrane Helix	49	69	0.84
Cytoplasmic	70	75	0.64
Transmembrane Helix	76	97	0.90
Non-Cytoplasmic	98	117	0.63
Transmembrane Helix	118	138	0.69
Cytoplasmic	139	147	0.51
Transmembrane Helix	148	169	0.85
Non-Cytoplasmic	170	187	0.45
Transmembrane Helix	188	206	0.64
Cytoplasmic	207	216	0.27
Transmembrane Helix	217	245	0.52
Non-Cytoplasmic	246	323	0.48
Transmembrane Helix	324	345	0.84
Cytoplasmic	346	361	0.63
Transmembrane Helix	362	383	0.88
Non-Cytoplasmic	384	407	0.59
Transmembrane Helix	408	428	0.81
Cytoplasmic	429	454	0.70
Transmembrane Helix	455	473	0.95
Non-Cytoplasmic	474	483	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNSAPFLF AFLPLVLAGF FGIRRMGWRP AMAFLTLASI VFYAWWNPAY AWPLAASIVG  60
   61 NFLFGLAIAR SRDTRWGGAI LALGVAANLA FLGIFKYERF FAESVAPLLG LMITSQRLEL 120
  121 PLGVSFFTFT QIAYLVDVRR NLVRDADALS YTLFVTFFPH LIAGPIIHHK EMMPQFRQPR 180
  181 RDCATSENLV AGLSLFAIGL FKKAVIADWV ASYVSPGFSA AGAGQDLGLL AAWQCALAYT 240
  241 VQIYFDFSGY SDMALGLARL FGIDLPVNFN SPYKATSIIE FWRRWHMTLS RFLRDYLYFP 300
  301 LGGGRCGPVR RHVNLMLVMT LGGLWHGAAW TFVAWGCLHG LMLVGNHAWR AIRPAVPGRG 360
  361 EVVAGWILTQ VLVVVAWVFF RAVNFDAALI VLKGMAGLNG LSGGAVKVAW DGLVLSLVLM 420
  421 AVCVAAPNSQ QIMSATGPGL EPVERPDRLA WRPTTGWAWT LAAMLACSAM TLWRTSEFLY 480
  481 YQF