YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73964763
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAQPSNHLE WNEPMHSLRI SVGGLPVLAS MTKAADPRFR PRWKVILPSF VGAAVLWLLY  60
   61 SHRPPPGRPP APNAHNWRLS QTPADRYNDT YPLSAPQRTP GGTRYRIAVI ADLDTESRAQ 120
  121 EENTWFSYLK KGYLTLSDSG DKVAVEWDKG HGVLESHLAE KGRGMELSEL IVFNGRLYSV 180
  181 DDRTGVIYQI EGTKAVPWVI LSDGDGTVGK GFKAEWLAVK DEHLYVGGLG KEWTTSTGEV 240
  241 MNENPEWVKV VGCRGSVDHE NWVSSYNALR AAAGIQPPGY LIHESACWSD TLQRWFFLPR 300
  301 RASHERYSEK DDEHKGTNLL LSAAQDFGDI SVSHVGEVVP THGFSSFKFI PDTDDQIIVA 360
  361 LKSEEDGGQI ATYIMAFTLD GRFLLPETKI GNVKYEGIEF I

Type	Start	End	Confidence
Cytoplasmic	1	42	0.58
Transmembrane Helix	43	60	0.92
Non-Cytoplasmic	61	401	0.98