YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATPF_NICTO
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNVTDSFVS LGHWPSAGSF GFNTDILATN PINLSVVLGV LIFFGKGVLS DLLDNRKQRI  60
   61 LNTIQNSEEL RGGAIEQLEK ARSRLRKVET EAEQFRVNGY SEIEREKLNL INSTYKTLEQ 120
  121 LENYKNETIQ FEQQRAINQV RQRVFQQVLR GALGTLNSCL NNELHLRTIS ANIGMLGTMK 180
  181 EITD

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.79
Transmembrane Helix	27	49	0.59
Cytoplasmic	50	184	0.56