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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73964368
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVRVGLTLL LCAVLLGSAS ASSDEEGSQD ESLDSKTPLP SDESVKDHST AGRVVAGQIF  60
   61 LDSEESELES PIQEEEDSLR SQEGESVTEE ISFLESPNSE NKDYEEPTKV RKQALTAIEG 120
  121 TAHGEPCHFP FLFLDKEYDE CTSDGREDGR LWCATTYDYK ADEKWGFCET EEEAAKRRQM 180
  181 QEAEMMYQTG MKILNGSNKK SQKREAYRYL QKAAGMNHTK ALERVSYALL FGDYLTQNIQ 240
  241 AAKEMFEKLT EEGSPKGQTA LGFLYASGLG VNSSQAKALV YYTFGALGGN LIAHMVLGYR 300
  301 YWAGIGVLQS CESALTHYRL VANHVASDIS LTGGSVVQRI RLPDEVENPG MNSGMLEEDL 360
  361 IQYYQFLAEK GDVQAQVGLG QLHLHGGRGV EQNHQRAFDY FNLAANAGNS HAMAFLGKMY 420
  421 SEGSDIVPQS NETALHYFKK AADMGNPVGQ SGLGMAYLYG RGVQVNYDLA LKYFQKAAEQ 480
  481 GWVDGQLQLG SMYYNGIGVK RDYKQALKYF NLASQGGHIL AFYNLAQMHA SGTGVMRSCH 540
  541 TAVELFKNVC ERGRWSERLM TAYNSYKDGD YNAAVIQYLL LAEQGYEVAQ SNAAFILDQR 600
  601 EATIVGENET YPRALLHWNR AASQGYTVAR IKLGDYHFYG FGTDVDYETA FIHYRLASEQ 660
  661 QHSAQAMFNL GYMHEKGLGI KQDIHLAKRF YDMAAEASPD AQVPVFLALC KLGVVYFLQY 720
  721 IRETNIRDMF TQLDMDQLLG PEWDLYLMTI IALLLGTVIA YRQRQHQDMP LPRPPGPRPG 780
  781 PPQQEGPPEQ QPPQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle