YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73964337
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.83
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	177	0.72
Transmembrane Helix	178	199	0.56
Cytoplasmic	200	210	0.53
Transmembrane Helix	211	234	0.85
Non-Cytoplasmic	235	261	0.48
Transmembrane Helix	262	286	0.77
Cytoplasmic	287	294	0.87
Transmembrane Helix	295	321	0.84
Non-Cytoplasmic	322	347	0.68
Transmembrane Helix	348	370	0.79
Cytoplasmic	371	543	0.83
Transmembrane Helix	544	562	0.73
Non-Cytoplasmic	563	666	0.89
Transmembrane Helix	667	689	0.92
Cytoplasmic	690	704	0.73
Transmembrane Helix	705	724	0.85
Non-Cytoplasmic	725	732	0.74
Transmembrane Helix	733	755	0.86
Cytoplasmic	756	769	0.72
Transmembrane Helix	770	789	0.93
Non-Cytoplasmic	790	820	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCATSRLLA AGTATAPPAQ PRGRGPGARC RRRELHFPGH PELPPGDFLL GRLARPSVPA  60
   61 GRRVALRRGR MPPAVGGGPA GSEPRPRRGR AGVEGARAVG PDVGAEPAAR SPKRPARGSR 120
  121 CTEAAGRWTL LTLVTLLSFA TRFHRLDEPR HICRDETHFG KMGSYYINRT FFFDVHPPLG 180
  181 KMLIGLAGYL SGYDGTFLFQ KPGDKYEHHN YMGMRGFCAF LGSLLVPFAY LTVLELSKSF 240
  241 PAALLTAALL TFDTGCLTLS QYILLDPILM FFIMAAMLSM VKYNSCANRP FSAPWWFWLS 300
  301 LTGINLAGAL GVKFVGLFII LQVGWNTISD LWHLFGDLSL SVVTVGKHLT ARILCLIALP 360
  361 LTLYTATYAI HFMVLNKSGP GDGFFSSAFQ ARLSGNNLHN ASIPEHLAYG SVITVKNLRM 420
  421 AIGYLHSHRH LYPEGIGARQ QQVTTYLHKD YNNLWIIKKH NTNADPLDPS IPVEFVRHGD 480
  481 IVRLEHKETS RNLHSHYHEA PLTRKHYQVT GYGINGTGDS NDFWRIEVIN RKFGNRIKVL 540
  541 RSRIRLIHLV TGCVLGSSGK VLPKWGWEQL EVTCTPYLKE TLNSIWNVED HINPKLPNIS 600
  601 LDVLQPTFPE ILLESHMVMI RGNNGLKPKD NEFTSKPWHW PINYQGLRFS GINDTDFRVY 660
  661 LLGNPVIWWL NLLSIALYLL LGSIIAVAVQ RGTHLPAEVE GLSQVLLQGG GQLLLGWMLH 720
  721 YFPFFLMGRI LYFHHYFPAM LFSSMLTGIL WDTLLRLCAW SLASSFLARG VYMVGILSLL 780
  781 LGTAYSFYLF HPLAYGMVGP LAQDPGSPMA GLRWLESWDF