YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73964194
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.92
Transmembrane Helix	132	152	0.81
Non-Cytoplasmic	153	161	0.63
Transmembrane Helix	162	180	0.75
Cytoplasmic	181	207	0.73
Transmembrane Helix	208	228	0.79
Non-Cytoplasmic	229	234	0.69
Transmembrane Helix	235	255	0.91
Cytoplasmic	256	260	0.77
Transmembrane Helix	261	282	0.89
Non-Cytoplasmic	283	293	0.79
Transmembrane Helix	294	313	0.94
Cytoplasmic	314	325	0.67
Transmembrane Helix	326	345	0.85
Non-Cytoplasmic	346	360	0.86
Transmembrane Helix	361	383	0.86
Cytoplasmic	384	419	0.91
Transmembrane Helix	420	441	0.93
Non-Cytoplasmic	442	445	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRQRLTQL AGRLQEPQKV ARFQRLCGVE ALPRRSAGPA AAQGEDEKAE APLARGVRRR  60
   61 EPQLGASAGP QPPGGGRNQC PAKPGGRGAP NGVRNGLASE LGPASPRRVG ALRRNSLTDE 120
  121 EGELAHVSNW PLYYLFCLGT ELGNELFYIL FFPFWIWNLD ALVGRRLVVI WVLVMYLGQC 180
  181 TKDVIRWPRP ASPPVVKLEV FYNSEYSMPS THAMSGTAIP IAMVLLTYGR WQYPLIYGLI 240
  241 LIPCWCSLVC LSRIYMGMHS ILDIIAGFLY TILILIIFYP FVDLIDNFNQ THKYAPLIII 300
  301 GLHLALGIFS FTLDTWSTSR GDTAEILGSG AGIACGSHVT YNMGLILDPS LDILPLARPP 360
  361 ITMTLCGKAI LRILIGMVFV LIVRDIMKKI TIPLACKIFN IPCDDVRKAR QHMEVELPYR 420
  421 YITYGMVGFS ITFFVPYIFF FIGIS