YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73963821
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSSRFPSP SLPIFFSPAP IDLGSVTSSS CSLNELDNIS HLLRKISTDI NEIKGMKAAI  60
   61 LTVEANLFDL NVRVSQNEAK ISSLEDKMNE CSTSSECNKQ FEDLQEEVDF ESQSRTPDVK 120
  121 MISFLRNIEK GTQQRQLLSR LQIDPVMAET LQISQDYYDM ESMVHADTRS FILKKPKLSE 180
  181 EIVVASNQES GMKTADTLRV LSGHLMQTRD LVQPDKPASP KFIVTLDGVP SPPGYMSDQE 240
  241 EDMCFEGVKP VNQTAASNKG LRGLLHPQQL QLMSRQLDDP NGSFLNAEMS ELSVVQKPEK 300
  301 LLERCKYWPA CKNGDECAYH HPVSPCKAFP NCKFAEKCLF VHPNCKYDAK CTKPDCPFTH 360
  361 MSRRIPVLPP KPAIATPAPP SSSQLCRYFP ACKKMECPFY HPKHCRFNTQ CTRPDCTFYH 420
  421 PTITVPPRHA LKWIRPQTSE

Type	Start	End	Confidence
Signal Peptide	1	28	0.71
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	440	0.99