YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73961781
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQFRGIEW PRAKNSEVIR VQTANSYSFP SSCTITKSHQ NRCCHFMIII ITIIIISIVT  60
   61 SLGAGNESCT LAGEGMSGRP AARQWGKCGP LCKRESIMVA FRGVWTQAFW KAVTAEFLAM 120
  121 LIFVLLSLGS TINWGGTEKP LPVDMVLISL CFGLSIATMV QCFGHISGGH INPAVTVAMV 180
  181 CTRKISIAKS VFYVAAQCLG AIIGAGILYL VTPPSVVGGL GVTTVHGNLT AGHGLLVELI 240
  241 ITFQLVFTIF ASCDSKRTDV TGSVALAIGF SVAIGHLFAI NYTGASMNPA RSFGPAVIMG 300
  301 NWENHWIYWV GPIIGAVLAG GLYEYVFCPD VELKRRLKEA FSKATQQTKR SYMEVEDNRS 360
  361 QVETEDLILK PGVVHVIDID RGEEKKGKDP SGEVLSSV

Type	Start	End	Confidence
Cytoplasmic	1	43	0.92
Transmembrane Helix	44	65	0.89
Non-Cytoplasmic	66	111	0.83
Transmembrane Helix	112	132	0.89
Cytoplasmic	133	140	0.68
Transmembrane Helix	141	160	0.83
Non-Cytoplasmic	161	165	0.50
Transmembrane Helix	166	185	0.70
Cytoplasmic	186	190	0.77
Transmembrane Helix	191	212	0.88
Non-Cytoplasmic	213	228	0.86
Transmembrane Helix	229	251	0.90
Cytoplasmic	252	259	0.86
Transmembrane Helix	260	280	0.92
Non-Cytoplasmic	281	305	0.90
Transmembrane Helix	306	327	0.96
Cytoplasmic	328	398	0.99