YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57088997
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAQPVTDTK EIKWQKVLYE RQPFPDNYVD RRFLEELRKN IYARKYQYWA VVFESSVVVQ  60
   61 QLCSVCVFVV IWWYMDEGLL APHWLFGTGL ASSLIGYVLF DLIDGGEGRK KSGRTRWADL 120
  121 KSALVFITFT YGFSPVLKTL TESVSTDTIY AMSVFMLLGH LIFFDYGANA AIVSSTLSLN 180
  181 MAIFASVCLA SRLPRSLHAF IMVTFAIQIF ALWPMLQKKL KACTPCSYVG VTLLFAFSAL 240
  241 GGLLSISAVG AILFAILLVS ISCLCPFYLI RLQLFKENIH GPWDEAEIKE DLSRFLS

Type	Start	End	Confidence
Cytoplasmic	1	47	0.99
Transmembrane Helix	48	73	0.88
Non-Cytoplasmic	74	79	0.86
Transmembrane Helix	80	103	0.87
Cytoplasmic	104	116	0.96
Transmembrane Helix	117	137	0.83
Non-Cytoplasmic	138	147	0.64
Transmembrane Helix	148	164	0.87
Cytoplasmic	165	170	0.66
Transmembrane Helix	171	190	0.89
Non-Cytoplasmic	191	196	0.67
Transmembrane Helix	197	216	0.92
Cytoplasmic	217	223	0.80
Transmembrane Helix	224	244	0.87
Non-Cytoplasmic	245	250	0.61
Transmembrane Helix	251	270	0.94
Cytoplasmic	271	297	0.92