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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73960115
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.47
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPFGSLASA KASNSRAAWK IVVDSFSSQH TPQVGTGGPQ ESDKALTFGE LTFSHSSPFF  60
   61 ICASPSLPPL HSSGLDDEPY CWTGFHCIKY LAGPASVPNS LERGSKILVS QASFPIRTSP 120
  121 YLTLLSRGEK KPLCSSVEKR PLGVLEMGSL TLLSEELKRQ LPGTLLLGQP PLLRERGGSS 180
  181 AEIDKTPLPI GRLLSGRLFK AALVIGCCRA DVTQLEPPRD PGFSPARQEV CGLGSRVEGA 240
  241 AGSNVNNLFF FLPLEMANPT VVISSCSSHE EENRCTFSQH TSPSEELLLE DQIRRKLKFF 300
  301 FMNPCEKFWA RGRKPWKLAI QILKIAMVTI QLVFFGLSNQ MVVAFKEENT IAFKHLFLKG 360
  361 YMDRMDDTYA VYTQRDVYDQ IIFAVNQYLL LRNTSVGNHA YENKGTEQSA MAICQHFYKQ 420
  421 GNICPGNDTF DIDPEIETEC FSVEPAEPFH VGTLEENKLN LTLDFHRLLT VDLQFKLKAI 480
  481 NLQTIRHHEL PDCYDFTLTI TFDNKAHSGR IKISLDNDIS IRECKDWHVS GSIQKNTHYM 540
  541 MIFDAFVILT CLASLTLCLR SVIRGLQLQQ EFVNFFLLHY KKEVSVSDRM EFVNGWYIMI 600
  601 IISDMLTIIG SILKMEIQAK SLTSYDVCSI LLGTSTMLVW LGVIRYLGFF QKYNLLILTL 660
  661 QAALPSVIRF CCCAAMIYLG YCFCGWIVLG PYHDKFRSLN MVSECLFSLI NGDDMFATFA 720
  721 KMQQKSYLVW LFSRIYLYSF ISLFIYMILS LFIALITDTY ETIKHYQQDG FPETELRTFI 780
  781 SECKDLPNSG KYRLEDDTPI SIFCCCKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle