YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73959985
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKKTFFNTR AFAPSLPRVQ KIAAGPAGLF ACSLDLTKRK GRLACSFFVF MKRAPILPHS  60
   61 RSDNPGKTPP APRAPGAADG PRRPPRPPGD APLPVRPRGS SREARFCSFQ PTSKSQPCSP 120
  121 PGLLPQGRAL GLGVLGFGSP LSSPRGTITC RPAGWAAAER AAAWILKQGH RSAGIHATRG 180
  181 KWREGRRWTP AHPGTSVGGG RGGRQRALQP PATPGRGPPP PGDCIPGLRT NQTRCAARAG 240
  241 SRRVPGCVPP SVCVWKRRAA RDRRRGTPSE ASPLHRRRPR SRLQSGVAPA PRRAEKMLPL 300
  301 SIKDDEYKPP KFNLFRKISG WFRSILSDKT SRNLFFFLCL NLSFAFVELL YGIWSNCLGL 360
  361 ISDSFHMFFD STAILAGLAA SVISKWRDND AFSYGYVRAE VLAGFVNGLF LIFTAFFIFS 420
  421 EGVERALAPP DVHHERLLLV SILGFVVNLV GIFVFKHGGH GHSHGSGHGH SHSLFNGVLD 480
  481 QAHGHGDHCH SHELKHGAAH SHDHAHGHGH FHSHDGPSLK ETAGPSRQIL QGVFLHILAD 540
  541 TLGSIGVIAS AIMMQNFGLM IADPICSILI AMLIVVSVIP LLRESVGILM QRTPPLLENT 600
  601 LPQCYQRVQQ LQGVYSLQEQ HFWTLCSDVY VGTLKLVVAP DADARWILSQ THNIFTQAGV 660
  661 RQLYVQIDFA AM

Type	Start	End	Confidence
Cytoplasmic	1	332	0.89
Transmembrane Helix	333	354	0.92
Non-Cytoplasmic	355	364	0.80
Transmembrane Helix	365	386	0.88
Cytoplasmic	387	395	0.86
Transmembrane Helix	396	419	0.86
Non-Cytoplasmic	420	436	0.83
Transmembrane Helix	437	455	0.96
Cytoplasmic	456	531	0.91
Transmembrane Helix	532	553	0.92
Non-Cytoplasmic	554	559	0.80
Transmembrane Helix	560	582	0.93
Cytoplasmic	583	672	0.94