YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73959857
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.62
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	233	0.94
Transmembrane Helix	234	253	0.95
Cytoplasmic	254	263	0.93
Transmembrane Helix	264	287	0.83
Non-Cytoplasmic	288	303	0.79
Transmembrane Helix	304	324	0.85
Cytoplasmic	325	333	0.94
Transmembrane Helix	334	355	0.89
Non-Cytoplasmic	356	376	0.91
Transmembrane Helix	377	401	0.90
Cytoplasmic	402	428	0.93
Transmembrane Helix	429	452	0.91
Non-Cytoplasmic	453	471	0.84
Transmembrane Helix	472	492	0.89
Cytoplasmic	493	541	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAIIENMS TRKLCVVGGA LLALQVAAFL VGGLVAPGPT TAVSYMSVKC VDVRKNHHKA  60
   61 KWLMPWGPNQ CDKIRDIEEA IPREIEANDI VFSVHIPLPS MEMSPWFQFM LFILQLDIAF 120
  121 KLNNQIRENA EVSMDVSLAY RDDMFAEWTE MAHERVPRKL KCTFTSPKTP EYEGRYYECD 180
  181 VLPFMEIGSV AHKYYLLNIR LPVNEKKKIN VGIGEIKDIQ LVGIHQNGGF TKVWFAMKTF 240
  241 LTPSIFIIMV WYWRRITMMS RPPVLLEKVI FALGISMTFI NIPVEWFSIG FDWTWMLLFG 300
  301 DIRQGIFYAM LLSFWIIFCG EHMMDQHERN HIAGYWKQVG PIAVGSFCLF IFDMCERGVQ 360
  361 LTNPFYSIWT TDVGTELAMA FIIVAGICLC LYFLFLCFMV FQVFRNISGK QSSLPAMSKV 420
  421 RRLHYEGLIF RFKFLMLITL ACAAMTVIFF IVSQVTEGHW KWGGVTVQVN SAFFTGIYGM 480
  481 WNLYVFALMF LYAPSHKNYG EDQSNGDLGV HSGEEVQLTT TITHVDGPTE IYKLTRKEAQ 540
  541 E